Title: OME-NGFF plate schema
| |
|---|
| Type | object |
| Required | No |
| Additional properties | Any type allowed |
Description: JSON from OME-NGFF .zattrs
| Property | Pattern | Type | Deprecated | Definition | Title/Description |
|---|
| - plate | No | object | No | - | - |
1. Property OME-NGFF plate schema > plate¶
| |
|---|
| Type | object |
| Required | No |
| Additional properties | Any type allowed |
| Property | Pattern | Type | Deprecated | Definition | Title/Description |
|---|
| - acquisitions | No | array of object | No | - | The acquisitions for this plate |
| - version | No | enum (of string) | No | - | The version of the specification |
| - field_count | No | integer | No | - | The maximum number of fields per view across all wells |
| - name | No | string | No | - | The name of the plate |
| + columns | No | array of object | No | - | The columns of the plate |
| + rows | No | array of object | No | - | The rows of the plate |
| + wells | No | array of object | No | - | The wells of the plate |
1.1. Property OME-NGFF plate schema > plate > acquisitions¶
| |
|---|
| Type | array of object |
| Required | No |
Description: The acquisitions for this plate
| Array restrictions |
|---|
| Min items | N/A |
| Max items | N/A |
| Items unicity | False |
| Additional items | False |
| Tuple validation | See below |
1.1.1. OME-NGFF plate schema > plate > acquisitions > acquisitions items¶
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|---|
| Type | object |
| Required | No |
| Additional properties | Any type allowed |
| Property | Pattern | Type | Deprecated | Definition | Title/Description |
|---|
| + id | No | integer | No | - | A unique identifier within the context of the plate |
| - maximumfieldcount | No | integer | No | - | The maximum number of fields of view for the acquisition |
| - name | No | string | No | - | The name of the acquisition |
| - description | No | string | No | - | The description of the acquisition |
| - starttime | No | integer | No | - | The start timestamp of the acquisition, expressed as epoch time i.e. the number seconds since the Epoch |
| - endtime | No | integer | No | - | The end timestamp of the acquisition, expressed as epoch time i.e. the number seconds since the Epoch |
1.1.1.1. Property OME-NGFF plate schema > plate > acquisitions > acquisitions items > id¶
Description: A unique identifier within the context of the plate
1.1.1.2. Property OME-NGFF plate schema > plate > acquisitions > acquisitions items > maximumfieldcount¶
Description: The maximum number of fields of view for the acquisition
1.1.1.3. Property OME-NGFF plate schema > plate > acquisitions > acquisitions items > name¶
Description: The name of the acquisition
1.1.1.4. Property OME-NGFF plate schema > plate > acquisitions > acquisitions items > description¶
Description: The description of the acquisition
1.1.1.5. Property OME-NGFF plate schema > plate > acquisitions > acquisitions items > starttime¶
Description: The start timestamp of the acquisition, expressed as epoch time i.e. the number seconds since the Epoch
1.1.1.6. Property OME-NGFF plate schema > plate > acquisitions > acquisitions items > endtime¶
Description: The end timestamp of the acquisition, expressed as epoch time i.e. the number seconds since the Epoch
1.2. Property OME-NGFF plate schema > plate > version¶
| |
|---|
| Type | enum (of string) |
| Required | No |
Description: The version of the specification
Must be one of:
1.3. Property OME-NGFF plate schema > plate > field_count¶
Description: The maximum number of fields per view across all wells
1.4. Property OME-NGFF plate schema > plate > name¶
Description: The name of the plate
1.5. Property OME-NGFF plate schema > plate > columns¶
| |
|---|
| Type | array of object |
| Required | Yes |
Description: The columns of the plate
| Array restrictions |
|---|
| Min items | 1 |
| Max items | N/A |
| Items unicity | True |
| Additional items | False |
| Tuple validation | See below |
1.5.1. OME-NGFF plate schema > plate > columns > columns items¶
| |
|---|
| Type | object |
| Required | No |
| Additional properties | Any type allowed |
| Property | Pattern | Type | Deprecated | Definition | Title/Description |
|---|
| + name | No | string | No | - | The column name |
1.5.1.1. Property OME-NGFF plate schema > plate > columns > columns items > name¶
Description: The column name
| Restrictions | |
|---|
| Must match regular expression | ^[A-Za-z0-9]+$ Test |
1.6. Property OME-NGFF plate schema > plate > rows¶
| |
|---|
| Type | array of object |
| Required | Yes |
Description: The rows of the plate
| Array restrictions |
|---|
| Min items | 1 |
| Max items | N/A |
| Items unicity | True |
| Additional items | False |
| Tuple validation | See below |
| Each item of this array must be | Description |
|---|
| rows items | - |
1.6.1. OME-NGFF plate schema > plate > rows > rows items¶
| |
|---|
| Type | object |
| Required | No |
| Additional properties | Any type allowed |
| Property | Pattern | Type | Deprecated | Definition | Title/Description |
|---|
| + name | No | string | No | - | The row name |
1.6.1.1. Property OME-NGFF plate schema > plate > rows > rows items > name¶
Description: The row name
| Restrictions | |
|---|
| Must match regular expression | ^[A-Za-z0-9]+$ Test |
1.7. Property OME-NGFF plate schema > plate > wells¶
| |
|---|
| Type | array of object |
| Required | Yes |
Description: The wells of the plate
| Array restrictions |
|---|
| Min items | 1 |
| Max items | N/A |
| Items unicity | True |
| Additional items | False |
| Tuple validation | See below |
1.7.1. OME-NGFF plate schema > plate > wells > wells items¶
| |
|---|
| Type | object |
| Required | No |
| Additional properties | Any type allowed |
| Property | Pattern | Type | Deprecated | Definition | Title/Description |
|---|
| + path | No | string | No | - | The path to the well subgroup |
| + rowIndex | No | integer | No | - | The index of the well in the rows list |
| + columnIndex | No | integer | No | - | The index of the well in the columns list |
1.7.1.1. Property OME-NGFF plate schema > plate > wells > wells items > path¶
Description: The path to the well subgroup
| Restrictions | |
|---|
| Must match regular expression | ^[A-Za-z0-9]+/[A-Za-z0-9]+$ Test |
1.7.1.2. Property OME-NGFF plate schema > plate > wells > wells items > rowIndex¶
Description: The index of the well in the rows list
1.7.1.3. Property OME-NGFF plate schema > plate > wells > wells items > columnIndex¶
Description: The index of the well in the columns list
Generated using json-schema-for-humans on 2026-01-13 at 13:42:05 +0000